Complete match of intron chain
104515
Intron match on the opposite strand
30914
Intron match on same strand (but all introns match)
16125
Unknown (intergenic)
15366
Multi-exon with at least one junction match
9614
Exonic overlap with reference on opposite strand
8655
Other same strand overlap
7482
Reverse intron match (introns match on opposite strand)
5333
Intron match on same strand (alternative)
2450
Contained in reference (intron compatible)
2449
Repeat region (soft-masked)
1055
Other overlap (ambiguous)
735
Single exon transfrag partially covering an intron
292
Possible polymerase run-on (within 2Kb)
62